Mac OS X Details on how to build peptide sequences and nucleic acid sequences by hand. Navigation Main page Recent changes Random page Help.
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Make Figures aids you in making publication quality figures for the currently displayed scene.
+rcubuntu2 : pymol : i : Feisty () : Ubuntu
Jump is a tool for jumping from one frame to another when you have a movie, MD simulation, or multiple models loaded into PyMOL. BbPlane will draw CGO planes across the backbone highlighting planarity of arrangement. New category about PyMOL performance: See Supercellthe new script for making XxYxZ supercells. This page was last edited on 14 Novemberat Cache —stores information on structures, so we don't have to recompute them.
Fetch has been updated to also load electron density maps. Looking for a particular representation--start here new!
We are now fully functional. Fetches the pka values for your protein from the propka server. GetNamesInSel — find the names of all objects in a selection. Wiki has been updated.
See test case comparisons. Thanks to a eagle-eyed user, our search has been fixed. Added a simple script for finding the center or mass, or moving a selection to the origin.
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DrawBoundingBox — Draw a bounding box around your selection. PyMol gets some new features.
LigAlign — Ligand-based active site alignment and comparison. Useful, if the user have pymol installed, but not python. It includes a very handy, rotation around line, function. Parses best suggestions back to pymol, for visual inspections.
Inspection is made easy by grouping the pka atoms in the pymol menu. Updated pymlo Kabsch code with a more elegant solution; fixed a small rotation bug. There are also upgrades planned for this pmol, so we may expect a little downtime for that. Details on how to build peptide sequences and nucleic acid sequences by hand.
This script is meant as a tool to finding the right dyes, when labelling suitable positions for the site-directed cysteine mutants.
Net ; they've done an incredible job! Retrieved from " http: Calculates the distance displacement between each residue and saves it as its b-factor. Cluster Count calculates statistics on the B-values for all atoms in the selected object. ResDe is a suite of programs designed to assist crystallographers in defining user defined hydrogen bond distance restraints, which can be helpful when refining low-resolution structures.
Spectrumany creates color gradients with arbitrary color sequences.